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GLnexus
Scalable datastore for population genome sequencing, with on-demand joint genotyping
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This is the complete list of members for GLnexus::BCFData, including all inherited members.
| dataset_header(const std::string &dataset, std::shared_ptr< const bcf_hdr_t > &hdr) const =0 | GLnexus::BCFData | pure virtual |
| dataset_range(const std::string &dataset, const bcf_hdr_t *hdr, const range &pos, std::vector< std::shared_ptr< bcf1_t > > &records)=0 | GLnexus::BCFData | pure virtual |
| dataset_range_and_header(const std::string &dataset, const range &pos, std::shared_ptr< const bcf_hdr_t > &hdr, std::vector< std::shared_ptr< bcf1_t > > &records) | GLnexus::BCFData | virtual |
| sampleset_range(const MetadataCache &metadata, const std::string &sampleset, const range &pos, std::shared_ptr< const std::set< std::string >> &samples, std::shared_ptr< const std::set< std::string >> &datasets, std::vector< std::unique_ptr< RangeBCFIterator >> &iterators) | GLnexus::BCFData | virtual |
| ~BCFData()=default (defined in GLnexus::BCFData) | GLnexus::BCFData | virtual |
1.8.7