GLnexus
Scalable datastore for population genome sequencing, with on-demand joint genotyping
|
This is the complete list of members for GLnexus::BCFData, including all inherited members.
dataset_header(const std::string &dataset, std::shared_ptr< const bcf_hdr_t > &hdr) const =0 | GLnexus::BCFData | pure virtual |
dataset_range(const std::string &dataset, const bcf_hdr_t *hdr, const range &pos, std::vector< std::shared_ptr< bcf1_t > > &records)=0 | GLnexus::BCFData | pure virtual |
dataset_range_and_header(const std::string &dataset, const range &pos, std::shared_ptr< const bcf_hdr_t > &hdr, std::vector< std::shared_ptr< bcf1_t > > &records) | GLnexus::BCFData | virtual |
sampleset_range(const MetadataCache &metadata, const std::string &sampleset, const range &pos, std::shared_ptr< const std::set< std::string >> &samples, std::shared_ptr< const std::set< std::string >> &datasets, std::vector< std::unique_ptr< RangeBCFIterator >> &iterators) | GLnexus::BCFData | virtual |
~BCFData()=default (defined in GLnexus::BCFData) | GLnexus::BCFData | virtual |