GLnexus
Scalable datastore for population genome sequencing, with on-demand joint genotyping
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Here is a list of all documented class members with links to the class documentation for each member:
- a -
all_samples_sampleset() :
GLnexus::BCFKeyValueData
,
GLnexus::Metadata
,
GLnexus::MetadataCache
allele_dp_format :
GLnexus::genotyper_config
alleles :
GLnexus::unified_site
- b -
begin_writes() :
GLnexus::KeyValue::DB
- c -
collection() :
GLnexus::KeyValue::DB
,
GLnexus::RocksKeyValue::DB
commit() :
GLnexus::KeyValue::WriteBatch
,
GLnexus::RocksKeyValue::WriteBatch
contigs() :
GLnexus::BCFKeyValueData
,
GLnexus::Metadata
,
GLnexus::MetadataCache
create_collection() :
GLnexus::KeyValue::DB
,
GLnexus::RocksKeyValue::DB
current() :
GLnexus::KeyValue::DB
- d -
dataset_header() :
GLnexus::BCFData
,
GLnexus::BCFKeyValueData
dataset_range() :
GLnexus::BCFData
,
GLnexus::BCFKeyValueData
dataset_range_and_header() :
GLnexus::BCFData
discover_alleles() :
GLnexus::Service
- g -
genotype_sites() :
GLnexus::Service
get() :
GLnexus::KeyValue::DB
,
GLnexus::KeyValue::Reader
,
GLnexus::RocksKeyValue::DB
,
GLnexus::RocksKeyValue::Reader
- i -
import_gvcf() :
GLnexus::BCFKeyValueData
InitializeDB() :
GLnexus::BCFKeyValueData
iterator() :
GLnexus::KeyValue::DB
,
GLnexus::KeyValue::Reader
- n -
next() :
GLnexus::RangeBCFIterator
- o -
Open() :
GLnexus::BCFKeyValueData
,
GLnexus::BCFScanner
,
GLnexus::BCFWriter
operator<() :
GLnexus::allele
operator==() :
GLnexus::allele
output_format :
GLnexus::genotyper_config
- r -
range() :
GLnexus::range
read_header() :
GLnexus::BCFScanner
ref_dp_format :
GLnexus::genotyper_config
ref_symbolic_allele :
GLnexus::genotyper_config
required_dp :
GLnexus::genotyper_config
RNC :
GLnexus::one_call
- s -
sample_count() :
GLnexus::BCFKeyValueData
,
GLnexus::Metadata
,
GLnexus::MetadataCache
sample_dataset() :
GLnexus::BCFKeyValueData
,
GLnexus::Metadata
,
GLnexus::MetadataCache
sampleset_range() :
GLnexus::BCFData
,
GLnexus::BCFKeyValueData
sampleset_samples() :
GLnexus::BCFKeyValueData
,
GLnexus::Metadata
,
GLnexus::MetadataCache
Status() :
GLnexus::Status
- u -
unification :
GLnexus::unified_site
- w -
write_header() :
GLnexus::BCFWriter
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