GLnexus::range Struct Reference

Genomic range (chromosome id, begin coordinate, end coordinate) More...

#include <types.h>

Public Member Functions
	range (int rid_, int beg_, int end_) noexcept
	range (const bcf1_t *bcf) noexcept
	range (const std::shared_ptr< const bcf1_t > &bcf) noexcept
size_t	size () const noexcept
bool	operator== (const range &r) const noexcept
bool	operator!= (const range &r) const noexcept
bool	operator< (const range &r) const noexcept
bool	operator<= (const range &r) const noexcept
bool	overlaps (const range &r) const noexcept
bool	within (const range &r) const noexcept
bool	contains (const range &r) const noexcept
std::unique_ptr< range >	intersect (const range &r) const
std::string	str (const std::vector< std::pair< std::string, size_t > > &contigs) const
std::string	str () const

Public Attributes
int	rid =-1
int	beg =-1
int	end =-1

Detailed Description

Genomic range (chromosome id, begin coordinate, end coordinate)

Constructor & Destructor Documentation

GLnexus::range::range ( const bcf1_t *  bcf )

inlinenoexcept

Get the genomic range covered by a bcf1_t record. The end position is determined by the END INFO field if present (for structural variants and gVCF reference coverage records), or from the length of the reference allele otherwise.

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The documentation for this struct was generated from the following file:

• include/types.h