GLnexus::genotyper_config Struct Reference

Public Member Functions
	genotyper_config (GLnexusOutputFormat _output_format)

Public Attributes
size_t	required_dp = 0
	Require any allele call to be supported by at least this depth.
std::string	allele_dp_format = "AD"
	FORMAT field to consult for per-allele depth in VCF records.
std::string	ref_symbolic_allele = "<NON_REF>"
	The symbolic allele used in gVCF reference confidence models.
std::string	ref_dp_format = "MIN_DP"
	FORMAT field to consult for reference depth in gVCF reference records.
GLnexusOutputFormat	output_format = GLnexusOutputFormat::BCF
	Output format (default = bcf), choices = "BCF", "VCF".
bool	output_residuals = false
std::string	residuals_file = "/tmp/residuals.yml"

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The documentation for this struct was generated from the following file:

• include/service_config.h