GLnexus::unified_site Struct Reference

Public Member Functions
bool	operator== (const unified_site &rhs) const noexcept
bool	operator< (const unified_site &rhs) const noexcept
	unified_site (const range &pos_) noexcept
Status	yaml (const std::vector< std::pair< std::string, size_t > > &contigs, YAML::Emitter &out) const

Static Public Member Functions
static Status	of_yaml (const YAML::Node &yaml, const std::vector< std::pair< std::string, size_t > > &contigs, unified_site &ans)

Public Attributes
range	pos
std::vector< std::string >	alleles
	Alleles at the position. More...
std::map< allele, int >	unification
std::vector< float >	observation_count

Member Data Documentation

std::vector<std::string> GLnexus::unified_site::alleles

Alleles at the position.

Each allele is a string over [ACTGN]+. The first allele is the reference. The order of the remaining alleles is arbitrary.

std::map<allele,int> GLnexus::unified_site::unification

Mapping of overlapping alleles (reference begin, reference end, allele DNA) onto the unified alleles (by index).

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The documentation for this struct was generated from the following files:

• include/types.h
• src/types.cc