GLnexus::BCFScanner Class Reference

Public Member Functions
bool	valid ()
Status	next ()
Status	overlaps (const range &rng, bool &ans)
Status	read (std::shared_ptr< bcf1_t > &ans)

Static Public Member Functions
static Status	Open (const char *buf, size_t bufsz, std::unique_ptr< BCFScanner > &ans)
static Status	read_header (const char *buf, int len, int &consumed, std::shared_ptr< bcf_hdr_t > &ans)
	Reads a BCF header from a memory buffer.

Member Function Documentation

Status GLnexus::BCFScanner::Open ( const char *  buf, size_t  bufsz, std::unique_ptr< BCFScanner > &  ans  )

static

Reads BCF records from a memory buffer (without the header). Allows peeking, and checking if a record overlaps a range, prior to fully opening the BCF record. The idea is to save the expensive unpack operation for records that the caller wishes to skip.

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The documentation for this class was generated from the following files:

• include/BCFSerialize.h
• src/BCFSerialize.cc